Genetic characterization of influenza A viruses circulating in pigs and isolated in north-east Spain during the period 2006-2007.
Identifieur interne : 000223 ( Main/Exploration ); précédent : 000222; suivant : 000224Genetic characterization of influenza A viruses circulating in pigs and isolated in north-east Spain during the period 2006-2007.
Auteurs : Massimiliano Baratelli [Espagne] ; Lorena C Rdoba [Espagne] ; Lester J. Pérez [Cuba] ; Jaime Maldonado [Espagne] ; Lorenzo Fraile [Espagne] ; José I. Nú Ez [Espagne] ; Maria Montoya [Espagne]Source :
- Research in veterinary science [ 1532-2661 ] ; 2014.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Animaux (MeSH), Données de séquences moléculaires (MeSH), Espagne (MeSH), Génome viral (génétique), Infections à Orthomyxoviridae (médecine vétérinaire), Infections à Orthomyxoviridae (virologie), Maladies des porcs (virologie), Phylogenèse (MeSH), Sous-type H1N1 du virus de la grippe A (génétique), Sous-type H1N2 du virus de la grippe A (génétique), Sous-type H3N2 du virus de la grippe A (génétique), Suidae (MeSH), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH), Virus recombinants (génétique).
- MESH :
- génétique : Génome viral, Sous-type H1N1 du virus de la grippe A, Sous-type H1N2 du virus de la grippe A, Sous-type H3N2 du virus de la grippe A, Virus recombinants.
- médecine vétérinaire : Infections à Orthomyxoviridae.
- virologie : Infections à Orthomyxoviridae, Maladies des porcs.
- Alignement de séquences, Analyse de séquence d'ADN, Animaux, Données de séquences moléculaires, Espagne, Phylogenèse, Suidae, Séquence d'acides aminés, Séquence nucléotidique.
- Wicri :
- geographic : Espagne.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Animals (MeSH), Base Sequence (MeSH), Genome, Viral (genetics), Influenza A Virus, H1N1 Subtype (genetics), Influenza A Virus, H1N2 Subtype (genetics), Influenza A Virus, H3N2 Subtype (genetics), Molecular Sequence Data (MeSH), Orthomyxoviridae Infections (veterinary), Orthomyxoviridae Infections (virology), Phylogeny (MeSH), Reassortant Viruses (genetics), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Spain (MeSH), Swine (MeSH), Swine Diseases (virology).
- MESH :
- geographic : Spain.
- genetics : Genome, Viral, Influenza A Virus, H1N1 Subtype, Influenza A Virus, H1N2 Subtype, Influenza A Virus, H3N2 Subtype, Reassortant Viruses.
- veterinary : Orthomyxoviridae Infections.
- virology : Orthomyxoviridae Infections, Swine Diseases.
- Amino Acid Sequence, Animals, Base Sequence, Molecular Sequence Data, Phylogeny, Sequence Alignment, Sequence Analysis, DNA, Swine.
Abstract
Swine influenza virus is one of the most important pathogens involved in the swine respiratory disease complex. Recent serological surveys showed a high prevalence of swine influenza strains belonging to the H1N1, H1N2 and H3N2 subtypes circulating in pigs in Spain. However, little is known about their genome sequence. Five swine influenza strains were isolated from some unrelated outbreaks occurred during 2006-2007, and their complete genome sequences were determined. Phylogenetic analysis revealed that they belonged to the lineages "Avian-Like" H1N1, "Human-Like" H3N2, and "Human-Like" H1N2, showing tight relationships with early or contemporary strains described in Europe. Notably, one virus of the H1N2 subtype showed genetic and antigenic divergence with the European contemporary strains or vaccinal strains of the same subtype, suggesting that some local and divergent clusters of the virus may pass unnoticed in routinary subtyping. Finally, analysis on the entire pattern of genome segments suggested that a second reassortment event could have influenced the evolution of that divergent H1N2 strain.
DOI: 10.1016/j.rvsc.2013.12.006
PubMed: 24461956
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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A., Amer, 17170 Girona</wicri:regionArea><placeName><region nuts="2" type="communauté">Catalogne</region></placeName></affiliation></author><author><name sortKey="Fraile, Lorenzo" sort="Fraile, Lorenzo" uniqKey="Fraile L" first="Lorenzo" last="Fraile">Lorenzo Fraile</name><affiliation wicri:level="4"><nlm:affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Universitat de Lleida, Veterinaria, Lleida, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Universitat de Lleida, Veterinaria, Lleida</wicri:regionArea><orgName type="university">Université autonome de Barcelone</orgName><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName></affiliation></author><author><name sortKey="Nu Ez, Jose I" sort="Nu Ez, Jose I" uniqKey="Nu Ez J" first="José I" last="Nú Ez">José I. Nú Ez</name><affiliation wicri:level="4"><nlm:affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université autonome de Barcelone</orgName></affiliation></author><author><name sortKey="Montoya, Maria" sort="Montoya, Maria" uniqKey="Montoya M" first="Maria" last="Montoya">Maria Montoya</name><affiliation wicri:level="4"><nlm:affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Institut de Recerca i Tecnologia Agroalimentaria (IRTA), Barcelona, Spain. Electronic address: maria.montoya@cresa.uab.es.</nlm:affiliation><country xml:lang="fr">Espagne</country><wicri:regionArea>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Institut de Recerca i Tecnologia Agroalimentaria (IRTA), Barcelona</wicri:regionArea><placeName><settlement type="city">Barcelone</settlement><region nuts="2" type="region">Catalogne</region></placeName><orgName type="university">Université autonome de Barcelone</orgName></affiliation></author></analytic><series><title level="j">Research in veterinary science</title><idno type="eISSN">1532-2661</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Animals (MeSH)</term><term>Base Sequence (MeSH)</term><term>Genome, Viral (genetics)</term><term>Influenza A Virus, H1N1 Subtype (genetics)</term><term>Influenza A Virus, H1N2 Subtype (genetics)</term><term>Influenza A Virus, H3N2 Subtype (genetics)</term><term>Molecular Sequence Data (MeSH)</term><term>Orthomyxoviridae Infections (veterinary)</term><term>Orthomyxoviridae Infections (virology)</term><term>Phylogeny (MeSH)</term><term>Reassortant Viruses (genetics)</term><term>Sequence Alignment (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Spain (MeSH)</term><term>Swine (MeSH)</term><term>Swine Diseases (virology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Animaux (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Espagne (MeSH)</term><term>Génome viral (génétique)</term><term>Infections à Orthomyxoviridae (médecine vétérinaire)</term><term>Infections à Orthomyxoviridae (virologie)</term><term>Maladies des porcs (virologie)</term><term>Phylogenèse (MeSH)</term><term>Sous-type H1N1 du virus de la grippe A (génétique)</term><term>Sous-type H1N2 du virus de la grippe A (génétique)</term><term>Sous-type H3N2 du virus de la grippe A (génétique)</term><term>Suidae (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Virus recombinants (génétique)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Spain</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Genome, Viral</term><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H1N2 Subtype</term><term>Influenza A Virus, H3N2 Subtype</term><term>Reassortant Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Génome viral</term><term>Sous-type H1N1 du virus de la grippe A</term><term>Sous-type H1N2 du virus de la grippe A</term><term>Sous-type H3N2 du virus de la grippe A</term><term>Virus recombinants</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à Orthomyxoviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Orthomyxoviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections à Orthomyxoviridae</term><term>Maladies des porcs</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Orthomyxoviridae Infections</term><term>Swine Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Alignment</term><term>Sequence Analysis, DNA</term><term>Swine</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Données de séquences moléculaires</term><term>Espagne</term><term>Phylogenèse</term><term>Suidae</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Espagne</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Swine influenza virus is one of the most important pathogens involved in the swine respiratory disease complex. Recent serological surveys showed a high prevalence of swine influenza strains belonging to the H1N1, H1N2 and H3N2 subtypes circulating in pigs in Spain. However, little is known about their genome sequence. Five swine influenza strains were isolated from some unrelated outbreaks occurred during 2006-2007, and their complete genome sequences were determined. Phylogenetic analysis revealed that they belonged to the lineages "Avian-Like" H1N1, "Human-Like" H3N2, and "Human-Like" H1N2, showing tight relationships with early or contemporary strains described in Europe. Notably, one virus of the H1N2 subtype showed genetic and antigenic divergence with the European contemporary strains or vaccinal strains of the same subtype, suggesting that some local and divergent clusters of the virus may pass unnoticed in routinary subtyping. Finally, analysis on the entire pattern of genome segments suggested that a second reassortment event could have influenced the evolution of that divergent H1N2 strain. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24461956</PMID><DateCompleted><Year>2014</Year><Month>11</Month><Day>24</Day></DateCompleted><DateRevised><Year>2014</Year><Month>03</Month><Day>28</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1532-2661</ISSN><JournalIssue CitedMedium="Internet"><Volume>96</Volume><Issue>2</Issue><PubDate><Year>2014</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Research in veterinary science</Title><ISOAbbreviation>Res. Vet. Sci.</ISOAbbreviation></Journal><ArticleTitle>Genetic characterization of influenza A viruses circulating in pigs and isolated in north-east Spain during the period 2006-2007.</ArticleTitle><Pagination><MedlinePgn>380-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.rvsc.2013.12.006</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S0034-5288(13)00388-3</ELocationID><Abstract><AbstractText>Swine influenza virus is one of the most important pathogens involved in the swine respiratory disease complex. Recent serological surveys showed a high prevalence of swine influenza strains belonging to the H1N1, H1N2 and H3N2 subtypes circulating in pigs in Spain. However, little is known about their genome sequence. Five swine influenza strains were isolated from some unrelated outbreaks occurred during 2006-2007, and their complete genome sequences were determined. Phylogenetic analysis revealed that they belonged to the lineages "Avian-Like" H1N1, "Human-Like" H3N2, and "Human-Like" H1N2, showing tight relationships with early or contemporary strains described in Europe. Notably, one virus of the H1N2 subtype showed genetic and antigenic divergence with the European contemporary strains or vaccinal strains of the same subtype, suggesting that some local and divergent clusters of the virus may pass unnoticed in routinary subtyping. Finally, analysis on the entire pattern of genome segments suggested that a second reassortment event could have influenced the evolution of that divergent H1N2 strain. </AbstractText><CopyrightInformation>Copyright © 2013 Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Baratelli</LastName><ForeName>Massimiliano</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Córdoba</LastName><ForeName>Lorena</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pérez</LastName><ForeName>Lester J</ForeName><Initials>LJ</Initials><AffiliationInfo><Affiliation>Centro Nacional de Sanidad Agropecuaria (CENSA), La Habana, Cuba.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Maldonado</LastName><ForeName>Jaime</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Hipra, S. A., Amer, 17170 Girona, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fraile</LastName><ForeName>Lorenzo</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Universitat de Lleida, Veterinaria, Lleida, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Núñez</LastName><ForeName>José I</ForeName><Initials>JI</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Montoya</LastName><ForeName>Maria</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain; Institut de Recerca i Tecnologia Agroalimentaria (IRTA), Barcelona, Spain. Electronic address: maria.montoya@cresa.uab.es.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>12</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Res Vet Sci</MedlineTA><NlmUniqueID>0401300</NlmUniqueID><ISSNLinking>0034-5288</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053118" MajorTopicYN="N">Influenza A Virus, H1N1 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D057221" MajorTopicYN="N">Influenza A Virus, H1N2 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D053122" MajorTopicYN="N">Influenza A Virus, H3N2 Subtype</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009976" MajorTopicYN="N">Orthomyxoviridae Infections</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013030" MajorTopicYN="N" Type="Geographic">Spain</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013552" MajorTopicYN="N">Swine</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013553" MajorTopicYN="N">Swine Diseases</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Sequencing</Keyword><Keyword MajorTopicYN="N">Spain</Keyword><Keyword MajorTopicYN="N">Swine influenza A virus</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>07</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2013</Year><Month>11</Month><Day>29</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>12</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>1</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>1</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>12</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24461956</ArticleId><ArticleId IdType="pii">S0034-5288(13)00388-3</ArticleId><ArticleId IdType="doi">10.1016/j.rvsc.2013.12.006</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Cuba</li><li>Espagne</li></country><region><li>Catalogne</li></region><settlement><li>Barcelone</li></settlement><orgName><li>Université autonome de Barcelone</li></orgName></list><tree><country name="Espagne"><region name="Catalogne"><name sortKey="Baratelli, Massimiliano" sort="Baratelli, Massimiliano" uniqKey="Baratelli M" first="Massimiliano" last="Baratelli">Massimiliano Baratelli</name></region><name sortKey="C Rdoba, Lorena" sort="C Rdoba, Lorena" uniqKey="C Rdoba L" first="Lorena" last="C Rdoba">Lorena C Rdoba</name><name sortKey="Fraile, Lorenzo" sort="Fraile, Lorenzo" uniqKey="Fraile L" first="Lorenzo" last="Fraile">Lorenzo Fraile</name><name sortKey="Maldonado, Jaime" sort="Maldonado, Jaime" uniqKey="Maldonado J" first="Jaime" last="Maldonado">Jaime Maldonado</name><name sortKey="Montoya, Maria" sort="Montoya, Maria" uniqKey="Montoya M" first="Maria" last="Montoya">Maria Montoya</name><name sortKey="Nu Ez, Jose I" sort="Nu Ez, Jose I" uniqKey="Nu Ez J" first="José I" last="Nú Ez">José I. Nú Ez</name></country><country name="Cuba"><noRegion><name sortKey="Perez, Lester J" sort="Perez, Lester J" uniqKey="Perez L" first="Lester J" last="Pérez">Lester J. Pérez</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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